STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH47177.1Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: Helix-turn-helix XRE-family like proteins. (143 aa)    
Predicted Functional Partners:
KOH45332.1
TIGRFAM: molyb_syn: molybdenum cofactor synthesis domain; Pfam: Competence-damaged protein; TIGRFAM: cinA_nterm: competence/damage-inducible protein CinA N-terminal domain; Pfam: Probable molybdopterin binding domain; SMART: Probable molybdopterin binding domain; TIGRFAM: cinA_cterm: competence/damage-inducible protein CinA C-terminal domain.
    
 0.688
KOH46769.1
Hypothetical protein; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
  
     0.665
KOH47178.1
Hypothetical protein.
       0.563
KOH42637.1
Pfam: Uncharacterized protein conserved in bacteria (DUF2264).
  
     0.532
KOH44368.1
Hypothetical protein; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
     0.529
KOH45234.1
Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
  
     0.522
KOH45966.1
Hypothetical protein; Pfam: ATP-dependent DNA helicase recG C-terminal.
  
     0.519
KOH46770.1
Hypothetical protein; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family.
  
     0.516
KOH43093.1
Hypothetical protein; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
     0.504
KOH45470.1
TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: Domain of unknown function; Pfam: 4Fe-4S dicluster domain; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase.
  
 
  0.496
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.