STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH47157.1DNA-(apurinic or apyrimidinic site) lyase; Adenine glycosylase active on G-A mispairs. (353 aa)    
Predicted Functional Partners:
KOH46836.1
Hypothetical protein; TIGRFAM: exoDNase_III: exodeoxyribonuclease III; TIGRFAM: xth: exodeoxyribonuclease III (xth); Pfam: Endonuclease/Exonuclease/phosphatase family.
    
 0.929
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
 
0.621
KOH47158.1
DNA-binding protein; SMART: bacterial (prokaryotic) histone like domain; Pfam: Bacterial DNA-binding protein; PRINTS: Prokaryotic integration host factor signature; Belongs to the bacterial histone-like protein family.
       0.606
KOH47156.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
     
 0.590
KOH43866.1
Pfam: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757: TIGR02757 family protein.
  
 
 0.559
KOH45406.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 
 0.545
KOH47155.1
Hemolysin; SMART: Transporter associated domain; Pfam: CBS domain; Pfam: Domain of unknown function DUF21; Pfam: Transporter associated domain; SMART: Domain in cystathionine beta-synthase and other proteins; TIGRFAM: GldE: gliding motility-associated protein GldE.
       0.520
KOH47154.1
TIGRFAM: GldD_lipo: gliding motility-associated lipoprotein GldD.
       0.507
KOH43790.1
Coproporphyrinogen dehydrogenase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.493
KOH46831.1
Hypothetical protein; Pfam: NUDIX domain; PRINTS: NUDIX hydrolase family signature; Belongs to the Nudix hydrolase family.
  
 
 0.475
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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