STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH47136.1Hypothetical protein; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein. (390 aa)    
Predicted Functional Partners:
KOH46959.1
Glutamate synthase; Pfam: GXGXG motif; Pfam: Conserved region in glutamate synthase; Pfam: Glutamine amidotransferases class-II; Pfam: Glutamate synthase central domain.
    
  0.691
KOH47137.1
Hypothetical protein.
       0.535
KOH47138.1
Hypothetical protein; Pfam: PKD domain; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain; SMART: Repeats in polycystic kidney disease 1 (PKD1) and other proteins.
       0.535
KOH47135.1
Phosphoribosylformylglycinamidine cyclo-ligase; Pfam: AIR synthase related protein, C-terminal domain.
       0.516
KOH42721.1
Hypothetical protein; Pfam: Helix-turn-helix domain; Pfam: AraC-like ligand binding domain; SMART: helix_turn_helix, arabinose operon control protein.
  
     0.492
KOH45021.1
Pfam: Malic enzyme, NAD binding domain; SMART: Malic enzyme, NAD binding domain; Pfam: Malic enzyme, N-terminal domain; Pfam: Phosphate acetyl/butaryl transferase.
   
 
  0.483
KOH43783.1
Hypothetical protein; Pfam: Helix-turn-helix domain; Pfam: AraC-like ligand binding domain; SMART: helix_turn_helix, arabinose operon control protein.
  
     0.443
KOH47134.1
SMART: GIY-YIG type nucleases (URI domain); Pfam: GIY-YIG catalytic domain.
       0.427
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.