STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH47153.1Pfam: Protein of unknown function (DUF559). (126 aa)    
Predicted Functional Partners:
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.720
KOH46959.1
Glutamate synthase; Pfam: GXGXG motif; Pfam: Conserved region in glutamate synthase; Pfam: Glutamine amidotransferases class-II; Pfam: Glutamate synthase central domain.
   
    0.692
KOH44224.1
Aspartokinase; Pfam: Homoserine dehydrogenase; Pfam: ACT domain; TIGRFAM: asp_kinases: aspartate kinase; Pfam: Amino acid kinase family; Pfam: Homoserine dehydrogenase, NAD binding domain.
    
  0.589
KOH44347.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.413
pheT
phenylalanyl-tRNA synthetase subunit beta; Pfam: Ferredoxin-fold anticodon binding domain; TIGRFAM: pheT_bact: phenylalanine--tRNA ligase, beta subunit; Pfam: Putative tRNA binding domain; SMART: Ferredoxin-fold anticodon binding domain; SMART: tRNA synthetase B5 domain; Pfam: tRNA synthetase B5 domain; Pfam: B3/4 domain; SMART: B3/4 domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
  0.400
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.