STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46941.1Homoserine dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold. (443 aa)    
Predicted Functional Partners:
KOH46939.1
UDP-glucose 4-epimerase; Pfam: NAD dependent epimerase/dehydratase family.
 
    0.933
KOH46940.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
     0.863
KOH46938.1
TIGRFAM: G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase; Pfam: Nucleotidyl transferase.
 
    0.806
KOH46323.1
Ribokinase; Pfam: pfkB family carbohydrate kinase.
  
     0.508
KOH46937.1
Hypothetical protein.
       0.460
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.437
KOH43262.1
Hypothetical protein; Pfam: Glycosyl transferases group 1; Pfam: Glycosyl transferase 4-like domain.
  
     0.413
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.