STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46777.1Hypothetical protein. (867 aa)    
Predicted Functional Partners:
KOH46776.1
Pfam: Baseplate J-like protein.
 
 
 
 0.997
KOH46773.1
Hypothetical protein; Pfam: Phage-related baseplate assembly protein; Pfam: Phage late control gene D protein (GPD); TIGRFAM: vgr_GE: Rhs element Vgr protein.
 
 
   0.996
KOH46775.1
Hypothetical protein; Pfam: Gene 25-like lysozyme.
 
 
   0.996
KOH45707.1
Hypothetical protein.
 
   0.995
KOH45703.1
Pfam: Phage tail sheath protein.
 
 
 
 0.985
KOH45704.1
Phage tail protein; TIGRFAM: TIGR02241: conserved hypothetical phage tail region protein; Pfam: T4-like virus tail tube protein gp19.
 
 
 
 0.984
KOH45705.1
Hypothetical protein; TIGRFAM: TIGR02241: conserved hypothetical phage tail region protein; Pfam: T4-like virus tail tube protein gp19.
 
 
 
 0.984
KOH45702.1
Hypothetical protein.
   
 
 0.936
KOH46778.1
Hypothetical protein.
 
 
   0.924
KOH46774.1
Type VI secretion protein; Pfam: PAAR motif.
 
     0.920
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.