STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46708.1Hypothetical protein; Pfam: Transposase DDE domain. (427 aa)    
Predicted Functional Partners:
KOH45378.1
Hypothetical protein.
  
     0.642
KOH43933.1
Hypothetical protein; SMART: Repeats in polycystic kidney disease 1 (PKD1) and other proteins; Pfam: PKD domain.
  
     0.592
KOH45577.1
Hypothetical protein; Pfam: Transposase DDE domain.
  
     0.571
KOH45252.1
Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter transmembrane region.
  
   
 0.557
KOH45253.1
ABC transporter ATP-binding protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter; Pfam: ABC transporter transmembrane region.
  
   
 0.557
KOH45940.1
Carbohydrate-binding protein SusD; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
     0.485
KOH45955.1
Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; PRINTS: AraC bacterial regulatory protein HTH signature.
  
     0.462
KOH47128.1
AraC family transcriptional regulator; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain.
  
     0.461
KOH44814.1
Pfam: Divergent AAA domain.
  
     0.461
KOH46971.1
Hypothetical protein; Pfam: Putative zinc- or iron-chelating domain.
  
     0.454
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.