STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46610.1Pfam: FecR protein. (395 aa)    
Predicted Functional Partners:
KOH46611.1
Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4.
 
  0.870
KOH44600.1
Hypothetical protein; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1.
  
  0.798
KOH46093.1
Hypothetical protein; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family.
  
  0.794
KOH46100.1
TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4; Pfam: Sigma-70 region 2.
  
  0.791
KOH44449.1
Pfam: FecR protein.
  
     0.774
KOH44447.1
Pfam: FecR protein.
  
     0.770
KOH44859.1
Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70, region 4.
  
  0.750
KOH45007.1
Hypothetical protein; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; SMART: helix_turn_helix, Lux Regulon; Pfam: Sigma-70, region 4.
  
  0.713
KOH43247.1
Hypothetical protein; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2.
  
  0.665
KOH44446.1
Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1.
  
  0.651
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.