STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46611.1Hypothetical protein; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Pfam: Sigma-70 region 2; Pfam: Sigma-70, region 4. (203 aa)    
Predicted Functional Partners:
KOH46610.1
Pfam: FecR protein.
 
  0.870
KOH44371.1
Pfam: FecR protein.
  
  0.698
KOH45230.1
Pfam: FecR protein.
  
  0.671
KOH46684.1
Pfam: FecR protein.
  
  0.667
KOH45486.1
Pfam: FecR protein.
  
  0.662
KOH45008.1
Pfam: FecR protein.
  
  0.654
KOH46465.1
Pfam: FecR protein.
  
  0.649
KOH46885.1
Pfam: FecR protein.
  
  0.640
KOH43640.1
Pfam: FecR protein.
  
  0.640
KOH46466.1
Hypothetical protein; Pfam: Sigma-70, region 4; TIGRFAM: sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; TIGRFAM: Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; Pfam: Sigma-70 region 2.
  
     0.639
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.