STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46395.1Hypothetical protein; Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Domain of unknown function (DUF4480); Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family. (1118 aa)    
Predicted Functional Partners:
KOH46394.1
Hypothetical protein; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
     0.943
KOH46391.1
Hypothetical protein; Pfam: Glycosyl hydrolase family 76.
 
     0.768
KOH44070.1
Hypothetical protein; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
 
     0.761
KOH45312.1
tonB-linked outer membrane protein; Pfam: TonB dependent receptor.
  
  
  0.757
KOH46279.1
Hypothetical protein; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
  
     0.750
KOH46089.1
Hypothetical protein; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
     0.750
KOH46771.1
Hypothetical protein; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
 
     0.733
KOH46677.1
Hypothetical protein; Pfam: Starch-binding associating with outer membrane.
  
     0.718
KOH44877.1
Glycan metabolism protein RagB; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
  
     0.713
KOH44597.1
Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
     0.713
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.