STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (246 aa)    
Predicted Functional Partners:
KOH45371.1
PRINTS: Seryl-tRNA synthetase signature; Pfam: tRNA synthetase class II core domain (G, H, P, S and T); Pfam: Seryl-tRNA synthetase N-terminal domain; TIGRFAM: serS: serine--tRNA ligase.
   
 
 0.866
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.820
KOH45786.1
Hypothetical protein; Pfam: OST-HTH/LOTUS domain; Pfam: NYN domain.
  
  
 0.729
rpmD
Pfam: Ribosomal protein L30p/L7e; TIGRFAM: rpmD_bact: ribosomal protein L30.
   
    0.711
KOH42978.1
TIGRFAM: rumA: 23S rRNA (uracil-5-)-methyltransferase RumA; Pfam: TRAM domain; Pfam: tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.656
KOH46262.1
Hypothetical protein; TIGRFAM: GldH_lipo: gliding motility-associated lipoprotein GldH; Pfam: GldH lipoprotein.
 
     0.639
rsmA
16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.577
KOH46260.1
methylated-DNA-[protein]-cysteine S-methyltransferase; Pfam: 6-O-methylguanine DNA methyltransferase, DNA binding domain.
       0.577
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.553
KOH46259.1
Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.546
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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