STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH46121.1Multidrug transporter MatE; Pfam: MatE; TIGRFAM: matE: MATE efflux family protein. (510 aa)    
Predicted Functional Partners:
KOH46695.1
Pfam: Squalene/phytoene synthase.
   
   0.676
KOH46120.1
Pfam: Low molecular weight phosphotyrosine protein phosphatase; PRINTS: LMW phosphotyrosine protein phosphatase signature; SMART: Low molecular weight phosphatase family.
       0.554
KOH45179.1
PRINTS: Ribosomal protein S1 signature; SMART: Ribosomal protein S1-like RNA-binding domain; Pfam: S1 RNA binding domain.
   
    0.487
KOH45523.1
Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II.
  
    0.437
KOH43701.1
SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II; Pfam: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain.
  
    0.437
hppA
Potassium transporter; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.
       0.406
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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