STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH45924.1Hypothetical protein; Pfam: TPR repeat; Pfam: Tetratricopeptide repeat; SMART: Tetratricopeptide repeats. (1526 aa)    
Predicted Functional Partners:
KOH43062.1
Histidine kinase; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain.
  
 0.880
ribA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
    
  0.858
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.858
KOH44554.1
Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Pfam: PAS fold; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; SMART: PAS domain; Pfam: PAS domain.
  
 0.849
KOH45776.1
Pfam: Hsp90 protein; PRINTS: 90kDa heat shock protein signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.842
KOH45130.1
Histidine kinase; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; SMART: PAS domain; PRINTS: Bacterial sensor protein C-terminal signature; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain; Pfam: PAS fold; SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: sensory_box: PAS domain S-box protein.
  
 0.821
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.815
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.810
KOH45511.1
SMART: Histidine kinase-like ATPases; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; SMART: His Kinase A (phosphoacceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: His Kinase A (phospho-acceptor) domain.
  
 0.797
KOH43435.1
Pfam: Bacterial regulatory proteins, luxR family; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain; Pfam: PAS domain; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: helix_turn_helix, Lux Regulon; PRINTS: LuxR bacterial regulatory protein HTH signature.
 
  
 0.796
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.