STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH45407.1DNA polymerase III subunit epsilon; Pfam: Exonuclease; SMART:. (281 aa)    
Predicted Functional Partners:
KOH45406.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.993
KOH46863.1
DNA polymerase III subunit alpha; Pfam: Helix-hairpin-helix motif; Pfam: PHP domain; Pfam: OB-fold nucleic acid binding domain; Pfam: Bacterial DNA polymerase III alpha subunit; SMART: DNA polymerase alpha chain like domain; TIGRFAM: polc: DNA polymerase III, alpha subunit.
   
 0.940
KOH46265.1
Hypothetical protein; Pfam: DNA polymerase III, delta subunit.
  
 0.928
KOH44776.1
Pfam: DNA polymerase III, delta subunit; TIGRFAM: holA: DNA polymerase III, delta subunit.
  
 
 0.920
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.884
KOH42590.1
Pfam: Bacterial DNA polymerase III alpha subunit; Pfam: PHP domain; SMART: DNA polymerase alpha chain like domain; TIGRFAM: polc: DNA polymerase III, alpha subunit; Pfam: Helix-hairpin-helix motif; Pfam: OB-fold nucleic acid binding domain; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
   
 0.819
rpmD
Pfam: Ribosomal protein L30p/L7e; TIGRFAM: rpmD_bact: ribosomal protein L30.
   
  0.763
KOH45140.1
Exonuclease; SMART:; TIGRFAM: dnaq: exonuclease, DNA polymerase III, epsilon subunit family; Pfam: Exonuclease.
  
  
0.759
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
  0.728
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
  0.713
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.