STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44708.1Hypothetical protein; Pfam: MacB-like periplasmic core domain; Pfam: FtsX-like permease family. (403 aa)    
Predicted Functional Partners:
lolD
ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 
  0.907
KOH46605.1
Hypothetical protein; Pfam: MacB-like periplasmic core domain; Pfam: FtsX-like permease family.
  
  
 
0.873
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.799
KOH44709.1
Type 11 methyltransferase; Pfam: Methyltransferase domain.
       0.777
lolD-2
ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 
  0.763
KOH46551.1
Hypothetical protein; Pfam: Surface antigen variable number repeat; TIGRFAM: OM_YaeT: outer membrane protein assembly complex, YaeT protein.
 
     0.762
KOH44658.1
Peptidylprolyl isomerase; Pfam: PPIC-type PPIASE domain.
  
     0.675
KOH45698.1
TIGRFAM: sigpep_I_bact: signal peptidase I; PRINTS: Bacterial leader peptidase 1 (S26A) family signature; Pfam: Signal peptidase, peptidase S26; Belongs to the peptidase S26 family.
  
  
 0.669
KOH47096.1
Hypothetical protein; Pfam: OmpA family; PRINTS: OMPA domain signature; Pfam: WD40-like Beta Propeller Repeat.
  
 
   0.660
KOH44002.1
Pfam: Periplasmic solute binding protein family.
      0.649
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.