STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44634.1Pfam: Protein of unknown function (DUF1456). (115 aa)    
Predicted Functional Partners:
rlmF
16S rRNA methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
  
     0.656
KOH44636.1
Hypothetical protein.
       0.493
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
   
    0.465
KOH43787.1
Hypothetical protein; Pfam: Domain of unknown function (DUF4292).
  
    0.450
KOH45698.1
TIGRFAM: sigpep_I_bact: signal peptidase I; PRINTS: Bacterial leader peptidase 1 (S26A) family signature; Pfam: Signal peptidase, peptidase S26; Belongs to the peptidase S26 family.
   
    0.431
KOH44637.1
Hypothetical protein.
 
     0.418
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.