STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44517.1Pfam: Acyltransferase family. (364 aa)    
Predicted Functional Partners:
KOH44516.1
Pfam: Ankyrin repeats (3 copies); SMART: ankyrin repeats.
 
     0.936
KOH44515.1
Pfam: TPR repeat; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Helix-turn-helix domain; SMART: Tetratricopeptide repeats; Pfam: Tetratricopeptide repeat; SMART: helix_turn_helix, arabinose operon control protein.
 
     0.876
KOH44518.1
Pfam: Beta-lactamase.
 
     0.774
KOH45346.1
Adenylate cyclase; SMART: Tetratricopeptide repeats; Pfam: Helix-turn-helix domain; Pfam: Tetratricopeptide repeat; SMART: helix_turn_helix, arabinose operon control protein.
 
     0.585
KOH44519.1
Hypothetical protein; Pfam: Domain of unknown function (DUF4386).
       0.513
KOH44520.1
6-aminohexanoate-dimer hydrolase; Pfam: Beta-lactamase.
       0.513
KOH46823.1
Hypothetical protein; Pfam: Staphylococcal nuclease homologue.
   
  
 0.466
KOH44514.1
Hypothetical protein.
       0.429
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.