STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44409.1Pfam: Outer membrane efflux protein. (416 aa)    
Predicted Functional Partners:
KOH44408.1
Pfam: HlyD family secretion protein.
 
  0.972
KOH44410.1
Pfam: Bacterial regulatory proteins, tetR family; PRINTS: TetR bacterial regulatory protein HTH signature.
 
     0.926
KOH44407.1
ABC transporter, ATP-binding/permease protein; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
 
     0.887
KOH45709.1
Pfam: ABC-2 family transporter protein.
 
     0.791
KOH45262.1
Pfam: ABC-2 family transporter protein.
 
     0.789
KOH45708.1
ABC transporter; SMART: ATPases associated with a variety of cellular activities; Pfam: ABC transporter.
 
     0.785
KOH44695.1
Pfam: HlyD family secretion protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.634
KOH42554.1
Pfam: HlyD family secretion protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.543
KOH46223.1
Hypothetical protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Pfam: HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.533
KOH46232.1
Pfam: HlyD family secretion protein; TIGRFAM: RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.533
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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