STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44360.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
KOH44804.1
Pfam: Protein of unknown function (DUF2764).
    
 
 0.874
KOH43116.1
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
  0.816
KOH44361.1
RNA polymerase sigma54 factor; Pfam: Sigma-54, DNA binding domain; TIGRFAM: rpoN_sigma: RNA polymerase sigma-54 factor; Pfam: Sigma-54 factor, core binding domain; Pfam: Sigma-54 factor, Activator interacting domain (AID); PRINTS: Sigma-54 factor signature.
       0.807
KOH44999.1
Hypothetical protein; Pfam: AMP-binding enzyme C-terminal domain; Pfam: AMP-binding enzyme.
    
  0.768
KOH42882.1
Pfam: AMP-binding enzyme C-terminal domain; Pfam: AMP-binding enzyme.
    
  0.768
KOH42733.1
AMP-dependent synthetase; Pfam: AMP-binding enzyme.
    
  0.768
KOH46632.1
Pfam: Pyridoxal-dependent decarboxylase conserved domain; PRINTS: Aromatic-L-amino-acid decarboxylase signature.
    
 0.568
KOH42493.1
Pfam: Outer membrane protein (OmpH-like); SMART: Outer membrane protein (OmpH-like).
  
     0.556
KOH44523.1
Hypothetical protein; Pfam: Domain of unknown function (DUF4105).
  
     0.543
asnS
asparaginyl-tRNA synthetase; Pfam: OB-fold nucleic acid binding domain; Pfam: tRNA synthetases class II (D, K and N); PRINTS: Aspartyl-tRNA synthetase signature; TIGRFAM: asnS: asparagine--tRNA ligase.
       0.541
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.