STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44367.1Hypothetical protein. (425 aa)    
Predicted Functional Partners:
KOH44368.1
Hypothetical protein; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
 
  0.637
KOH44369.1
Collagen-binding protein; Pfam: TonB dependent receptor.
       0.598
KOH44366.1
Hypothetical protein.
  
    0.583
KOH44370.1
Ribonuclease P; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: TonB dependent receptor; Pfam: Domain of unknown function (DUF4480); SMART: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain; Pfam: Secretin and TonB N terminus short domain.
  
    0.545
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.407
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.