STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH44396.1Hypothetical protein; Pfam: Acetyltransferase (GNAT) domain. (209 aa)    
Predicted Functional Partners:
KOH45470.1
TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: Domain of unknown function; Pfam: 4Fe-4S dicluster domain; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase.
    
  0.853
KOH46959.1
Glutamate synthase; Pfam: GXGXG motif; Pfam: Conserved region in glutamate synthase; Pfam: Glutamine amidotransferases class-II; Pfam: Glutamate synthase central domain.
   
 
 0.761
KOH44701.1
Cytochrome C4; SMART: Chorismate mutase type II; Pfam: Chorismate mutase type II; Pfam: DAHP synthetase I family.
    
  0.725
KOH44395.1
Hypothetical protein.
       0.671
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.657
KOH46784.1
Transketolase; Pfam: Dehydrogenase E1 component; Pfam: Transketolase, C-terminal domain; Pfam: Transketolase, pyrimidine binding domain; SMART: Transketolase, pyrimidine binding domain.
    
  0.603
KOH46313.1
2-oxoisovalerate dehydrogenase subunit beta; Pfam: Transketolase, C-terminal domain; Pfam: Dehydrogenase E1 component; SMART: Transketolase, pyrimidine binding domain; Pfam: Transketolase, pyrimidine binding domain.
    
  0.603
KOH46133.1
Pfam: Dehydrogenase E1 component; SMART: Transketolase, pyrimidine binding domain; Pfam: Transketolase, C-terminal domain; Pfam: Transketolase, pyrimidine binding domain.
    
  0.603
carA
Carbamoyl phosphate synthase small subunit; PRINTS: Glutamine amidotransferase superfamily signature; Pfam: Glutamine amidotransferase class-I; TIGRFAM: CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit; PRINTS: Carbamoyl-phosphate synthase protein GATase domain signature; PRINTS: Anthranilate synthase component II signature; SMART: Carbamoyl-phosphate synthase small chain, CPSase domain; Pfam: Carbamoyl-phosphate synthase small chain, CPSase domain; Belongs to the CarA family.
  
 
  0.601
KOH44394.1
Hypothetical protein.
  
  
 0.590
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.