KOH43940.1 protein (Sunxiuqinia dokdonensis)

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second shell of interactors

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Predicted Interactions

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Score

KOH43940.1

Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence. (437 aa)

Predicted Functional Partners:

KOH43941.1

0.781

KOH45062.1

0.746

KOH45213.1

0.728

KOH44608.1

0.714

KOH42863.1

0.694

KOH42703.1

0.643

KOH45214.1

0.641

KOH44344.1

0.631

KOH45465.1

0.630

KOH45185.1

0.615

Your Current Organism:

Sunxiuqinia dokdonensis

NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOH42703.1	KOH42863.1	NC99_44880	NC99_43060	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.759
KOH42703.1	KOH43940.1	NC99_44880	NC99_32310	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	0.643
KOH42703.1	KOH45062.1	NC99_44880	NC99_21870	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.927
KOH42703.1	KOH45465.1	NC99_44880	NC99_17180	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.690
KOH42863.1	KOH42703.1	NC99_43060	NC99_44880	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	0.759
KOH42863.1	KOH43940.1	NC99_43060	NC99_32310	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	0.694
KOH42863.1	KOH44344.1	NC99_43060	NC99_27910	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	0.752
KOH42863.1	KOH45185.1	NC99_43060	NC99_20470	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	Putative multi-domain protein; Pfam: Domain of Unknown Function (DUF1080).	0.760
KOH42863.1	KOH45465.1	NC99_43060	NC99_17180	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.731
KOH43940.1	KOH42703.1	NC99_32310	NC99_44880	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	0.643
KOH43940.1	KOH42863.1	NC99_32310	NC99_43060	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.694
KOH43940.1	KOH43941.1	NC99_32310	NC99_32320	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Pfam: AP endonuclease family 2 C terminus; Pfam: Xylose isomerase-like TIM barrel.	0.781
KOH43940.1	KOH44344.1	NC99_32310	NC99_27910	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Glycosyl hydrolase; Pfam: Domain of Unknown Function (DUF1080).	0.631
KOH43940.1	KOH44608.1	NC99_32310	NC99_25930	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Endonuclease; Pfam: Xylose isomerase-like TIM barrel.	0.714
KOH43940.1	KOH45062.1	NC99_32310	NC99_21870	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.746
KOH43940.1	KOH45185.1	NC99_32310	NC99_20470	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Putative multi-domain protein; Pfam: Domain of Unknown Function (DUF1080).	0.615
KOH43940.1	KOH45213.1	NC99_32310	NC99_20750	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.728
KOH43940.1	KOH45214.1	NC99_32310	NC99_20760	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Sugar phosphate isomerases/epimerase; Pfam: Xylose isomerase-like TIM barrel.	0.641
KOH43940.1	KOH45465.1	NC99_32310	NC99_17180	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	Hypothetical protein; Pfam: Domain of Unknown Function (DUF1080).	0.630
KOH43941.1	KOH43940.1	NC99_32320	NC99_32310	Pfam: AP endonuclease family 2 C terminus; Pfam: Xylose isomerase-like TIM barrel.	Putative NADH-dependent dehydrogenase; Pfam: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence.	0.781

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Network Stats

number of nodes:

11

number of edges:

34

average node degree:

6.18

avg. local clustering coefficient:

0.958

expected number of edges:

16

PPI enrichment p-value:

7.21e-05

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042254

Ribosome biogenesis

8 of 258

1.27

1.58

2.60e-06

GO:0016072

rRNA metabolic process

7 of 202

1.32

1.58

8.07e-06

GO:0006364

rRNA processing

6 of 190

1.28

1.3

0.00014

GO:0000463

Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

3 of 23

1.9

1.3

0.0026

GO:0042273

Ribosomal large subunit biogenesis

4 of 71

1.53

1.23

0.0016

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005730

Nucleolus

7 of 218

1.29

1.52

9.72e-06

GO:0030687

Preribosome, large subunit precursor

3 of 32

1.76

1.26

0.0026

GO:0043232

Intracellular non-membrane-bounded organelle

8 of 871

0.75

0.58

0.0020

GO:0005634

Nucleus

10 of 1664

0.56

0.44

0.0020

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2035

Mixed, incl. UBX domain, and VCP-NPL4-UFD1 AAA ATPase complex

4 of 13

2.27

2.92

1.75e-06

CL:3948

Preribosome, large subunit precursor, and Ribosomal large subunit biogenesis

5 of 55

1.74

2.35

2.46e-06

CL:3946

Preribosome, and Nucleolus

6 of 108

1.53

2.06

1.75e-06

CL:3952

Preribosome, large subunit precursor, and Ribosomal large subunit biogenesis

4 of 41

1.77

1.95

4.61e-05

CL:3937

rRNA processing, and mRNA decay by 3 to 5 exoribonuclease

7 of 156

1.44

1.91

1.54e-06

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005730

Nucleolus

4 of 94

1.41

0.97

0.0058

GOCC:0005634

Nucleus

9 of 997

0.74

0.59

0.0014

GOCC:0043231

Intracellular membrane-bounded organelle

10 of 2125

0.46

0.32

0.0248

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00166

Domain present in ubiquitin-regulatory proteins

2 of 3

2.61

1.19

0.0067

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