STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43920.1Pfam: Lysine-2,3-aminomutase; Pfam: Radical SAM superfamily; TIGRFAM: TIGR00238: KamA family protein; TIGRFAM: lys_2_3_AblA: lysine-2,3-aminomutase. (436 aa)    
Predicted Functional Partners:
KOH43919.1
Hypothetical protein; Pfam: Acetyltransferase (GNAT) domain; TIGRFAM: GNAT_ablB: putative beta-lysine N-acetyltransferase.
  
 0.977
KOH46589.1
Lysine 2,3-aminomutase; Pfam: 4Fe-4S single cluster domain.
  
  
 
0.777
KOH43916.1
Hypothetical protein; Pfam: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.773
KOH43917.1
Hypothetical protein.
       0.773
KOH43918.1
Hypothetical protein.
       0.773
KOH45470.1
TIGRFAM: pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; Pfam: Domain of unknown function; Pfam: 4Fe-4S dicluster domain; Pfam: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; SMART: Domain of unknown function; Pfam: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pfam: Pyruvate ferredoxin/flavodoxin oxidoreductase.
   
   0.618
KOH43914.1
Fe-S oxidoreductase; Pfam: Putative zinc- or iron-chelating domain.
       0.568
KOH43915.1
Hypothetical protein; Pfam: EamA-like transporter family.
       0.566
KOH46877.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
 0.517
KOH44224.1
Aspartokinase; Pfam: Homoserine dehydrogenase; Pfam: ACT domain; TIGRFAM: asp_kinases: aspartate kinase; Pfam: Amino acid kinase family; Pfam: Homoserine dehydrogenase, NAD binding domain.
    
 0.448
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.