STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43824.1Hypothetical protein; SMART: helix_turn_helix, Lux Regulon; Pfam: Bacterial regulatory proteins, luxR family; Pfam: Y_Y_Y domain. (927 aa)    
Predicted Functional Partners:
KOH44516.1
Pfam: Ankyrin repeats (3 copies); SMART: ankyrin repeats.
  
 0.810
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.796
KOH45776.1
Pfam: Hsp90 protein; PRINTS: 90kDa heat shock protein signature; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.792
KOH44554.1
Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain); Pfam: PAS fold; SMART: His Kinase A (phosphoacceptor) domain; Pfam: His Kinase A (phospho-acceptor) domain; PRINTS: Bacterial sensor protein C-terminal signature; TIGRFAM: sensory_box: PAS domain S-box protein; SMART: Histidine kinase-like ATPases; SMART: PAS domain; Pfam: PAS domain.
    
 0.789
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 0.765
KOH45940.1
Carbohydrate-binding protein SusD; Pfam: Starch-binding associating with outer membrane; Pfam: SusD family.
  
 
   0.746
KOH43062.1
Histidine kinase; SMART: cheY-homologous receiver domain; Pfam: Response regulator receiver domain.
    
 0.725
KOH45941.1
Collagen-binding protein; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; SMART: Secretin and TonB N terminus short domain; Pfam: Domain of unknown function (DUF4480); Pfam: TonB dependent receptor; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: Secretin and TonB N terminus short domain; Pfam: TonB-dependent Receptor Plug Domain.
  
     0.721
KOH43935.1
Collagen-binding protein; Pfam: TonB-dependent Receptor Plug Domain; Pfam: TonB dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480); TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
     0.715
KOH43828.1
Hypothetical protein; Pfam: Putative glucoamylase.
  
     0.714
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.