STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43829.1Hypothetical protein; Pfam: Putative glucoamylase; TIGRFAM: Por_Secre_tail: Por secretion system C-terminal sorting domain. (802 aa)    
Predicted Functional Partners:
KOH43830.1
Endo-1,4-beta-xylanase; Pfam: F5/8 type C domain; Pfam: Glycosyl hydrolases family 43.
 
     0.895
KOH43831.1
beta-D-glucoside glucohydrolase; Pfam: Fibronectin type III-like domain; Pfam: Glycosyl hydrolase family 3 N terminal domain; PRINTS: Glycosyl hydrolase family 3 signature; Pfam: Glycosyl hydrolase family 3 C-terminal domain; Belongs to the glycosyl hydrolase 3 family.
    0.827
KOH43825.1
tonB-dependent receptor; TIGRFAM: OMP_RagA_SusC: TonB-linked outer membrane protein, SusC/RagA family; Pfam: Domain of unknown function (DUF4480); Pfam: TonB-dependent Receptor Plug Domain; TIGRFAM: SusC_RagA_signa: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Pfam: TonB dependent receptor.
 
     0.762
KOH43826.1
Glycan metabolism protein RagB; Pfam: SusD family; Pfam: Starch-binding associating with outer membrane.
  
     0.744
KOH43824.1
Hypothetical protein; SMART: helix_turn_helix, Lux Regulon; Pfam: Bacterial regulatory proteins, luxR family; Pfam: Y_Y_Y domain.
  
     0.694
KOH43936.1
Pfam: Bacterial regulatory proteins, luxR family; Pfam: Y_Y_Y domain; SMART: helix_turn_helix, Lux Regulon.
 
     0.610
KOH43832.1
Pfam: Sulfatase.
       0.563
KOH46369.1
Pfam: Endonuclease/Exonuclease/phosphatase family.
 
     0.513
KOH45412.1
Metal-dependent hydrolase; Pfam: Endonuclease/Exonuclease/phosphatase family.
 
     0.510
KOH46890.1
Pfam: Endonuclease/Exonuclease/phosphatase family.
 
     0.471
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.