STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43630.1Hypothetical protein. (180 aa)    
Predicted Functional Partners:
KOH43629.1
Heat-shock protein Hsp15; Pfam: S4 domain; SMART: S4 RNA-binding domain.
       0.795
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.791
KOH43168.1
Hypothetical protein; Pfam: TPR repeat; Pfam: Tetratricopeptide repeat.
  
     0.765
KOH46293.1
Pfam: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
  
     0.758
KOH46497.1
Hypothetical protein.
  
    0.745
KOH46349.1
Hypothetical protein; Pfam: Domain of unknown function (DUF4494).
  
     0.708
KOH43437.1
Hypothetical protein.
  
     0.683
KOH44189.1
Hypothetical protein.
  
     0.666
KOH46830.1
Lytic transglycosylase; SMART: Bacterial periplasmic substrate-binding proteins; Pfam: Transglycosylase SLT domain; Pfam: Bacterial extracellular solute-binding proteins, family 3.
  
     0.643
KOH46292.1
Hypothetical protein.
  
     0.604
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.