STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43543.1PRINTS: Short-chain dehydrogenase/reductase (SDR) superfamily signature; Pfam: short chain dehydrogenase; SMART:; PRINTS: Glucose/ribitol dehydrogenase family signature; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (267 aa)    
Predicted Functional Partners:
KOH46959.1
Glutamate synthase; Pfam: GXGXG motif; Pfam: Conserved region in glutamate synthase; Pfam: Glutamine amidotransferases class-II; Pfam: Glutamate synthase central domain.
  
 
  0.846
KOH43542.1
Hypothetical protein; Pfam: Thioesterase superfamily; TIGRFAM: TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family.
  
    0.810
fabZ
hydroxymyristoyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
     
 0.737
KOH46481.1
TIGRFAM: FtcD: glutamate formiminotransferase; Pfam: Formiminotransferase domain; Pfam: Formiminotransferase domain, N-terminal subdomain; Pfam: Formiminotransferase-cyclodeaminase.
    
 0.719
KOH46691.1
Pfam: Fatty acid desaturase.
  
  
 0.602
KOH45095.1
Hypothetical protein; Pfam: Transglutaminase-like superfamily.
  
     0.576
KOH45717.1
Hypothetical protein.
  
     0.545
KOH46898.1
Pfam: Outer membrane protein beta-barrel domain.
  
     0.539
KOH45441.1
8-amino-7-oxononanoate synthase; Pfam: Aminotransferase class I and II.
 
 
 0.537
KOH45718.1
Hypothetical protein.
  
     0.532
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.