STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (366 aa)    
Predicted Functional Partners:
KOH45685.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.973
KOH43492.1
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.926
KOH44786.1
Hypothetical protein; Pfam: Flavodoxin domain.
    
 0.859
KOH45584.1
Hypothetical protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
   
 
 0.840
KOH45686.1
PRINTS: Coprogen oxidase signature; Pfam: Coproporphyrinogen III oxidase.
 
   
 0.778
KOH45684.1
TIGRFAM: hemN: oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3, MiaB family, Radical SAM; Pfam: Radical SAM superfamily; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.572
KOH43565.1
Hypothetical protein.
       0.568
KOH43014.1
Hypothetical protein; Pfam: 4Fe-4S single cluster domain; Pfam: Radical SAM superfamily.
  
 
 0.558
KOH45162.1
Ferritin; Iron-storage protein.
     
 0.547
KOH43696.1
Pfam: Multicopper oxidase.
   
 
 0.528
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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