STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43505.1Hypothetical protein. (42 aa)    
Predicted Functional Partners:
KOH43504.1
Pfam: Carbon-nitrogen hydrolase.
       0.594
KOH43506.1
Transcriptional regulator; Pfam: Penicillinase repressor.
       0.498
KOH43507.1
Hypothetical protein; Pfam: BlaR1 peptidase M56; Pfam: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: tonB_Cterm: TonB family C-terminal domain.
       0.498
KOH43503.1
Phosphonate ABC transporter ATP-binding protein; Pfam: ABC transporter; SMART: ATPases associated with a variety of cellular activities.
       0.438
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.