STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH43385.1Pfam: Uncharacterized protein conserved in bacteria (DUF2147). (149 aa)    
Predicted Functional Partners:
KOH43383.1
Hypothetical protein; TIGRFAM: AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme; Pfam: Radical SAM superfamily; Pfam: 4Fe-4S single cluster domain.
       0.542
KOH43384.1
Pfam: Memo-like protein; TIGRFAM: AmmeMemoSam_B: AmmeMemoRadiSam system protein B; Belongs to the MEMO1 family.
       0.542
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.522
KOH43387.1
Hypothetical protein; Pfam: Pyridoxamine 5'-phosphate oxidase.
       0.499
KOH45732.1
Hypothetical protein; Pfam: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase.
 
     0.406
KOH45927.1
Hypothetical protein; Pfam: Surface antigen.
  
     0.403
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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