STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH42992.1Pfam: PhoH-like protein. (332 aa)    
Predicted Functional Partners:
recO
Hypothetical protein; Involved in DNA repair and RecF pathway recombination.
  
    0.803
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Pfam: SAICAR synthetase.
       0.792
rsfS
Hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
 
     0.621
KOH42989.1
Histidine kinase; SMART: Tetratricopeptide repeats; Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; SMART: His Kinase A (phosphoacceptor) domain; SMART: Histidine kinase-like ATPases; PRINTS: Bacterial sensor protein C-terminal signature; Pfam: Tetratricopeptide repeat.
  
    0.588
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.552
KOH42990.1
Hypothetical protein; Pfam: AhpC/TSA family.
       0.527
KOH42993.1
Pfam: D-Ala-D-Ala carboxypeptidase 3 (S13) family; PRINTS: D-Ala-D-Ala carboxypeptidase 3 (S13) family signature; TIGRFAM: PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
       0.522
KOH47159.1
Pfam: S1 RNA binding domain; Pfam: Ribonuclease E/G family; TIGRFAM: RNaseEG: ribonuclease, Rne/Rng family; SMART: Ribosomal protein S1-like RNA-binding domain.
 
    0.496
clpX
ATPase AAA; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
    0.495
KOH44011.1
Pfam: Cytidine and deoxycytidylate deaminase zinc-binding region.
  
    0.482
Your Current Organism:
Sunxiuqinia dokdonensis
NCBI taxonomy Id: 1409788
Other names: CGMCC 1.12676, JCM 19380, KCTC 32503, S. dokdonensis, Sunxiuqinia sp. DH1, strain DH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.