STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000621765_01679Unannotated protein. (284 aa)    
Predicted Functional Partners:
GCA_000621765_01628
Unannotated protein.
  
 0.952
GCA_000621765_01024
Unannotated protein.
  
 
 0.924
GCA_000621765_01754
Unannotated protein.
  
 
 0.908
GCA_000621765_02571
Unannotated protein.
  
 
 0.890
GCA_000621765_01130
Unannotated protein.
  
 
 0.885
GCA_000621765_02663
Unannotated protein.
   
 0.852
GCA_000621765_00015
Unannotated protein.
  
 
 0.843
GCA_000621765_02082
Unannotated protein.
  
 
  0.827
GCA_000621765_02083
Unannotated protein.
    
  0.824
GCA_000621765_02067
Unannotated protein.
  
 
  0.777
Your Current Organism:
Ruminococcaceae bacterium AB4001
NCBI taxonomy Id: 1410638
Other names: R. bacterium AB4001
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