STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_4Unannotated protein; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
gcvA_7
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.697
allS_3
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.644
abgR_3
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.617
hcaR_3
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.607
gcvA_6
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.544
iolS_1
Unannotated protein.
       0.537
benM_2
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.524
gltR_2
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.522
abgR_2
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.499
abgR_4
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.468
Your Current Organism:
Serratia ficaria
NCBI taxonomy Id: 1411141
Other names: S. ficaria NBRC 102596, Serratia ficaria NBRC 102596
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.