STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCL28166.1Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology. (570 aa)    
Predicted Functional Partners:
OCL28140.1
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
OCL27024.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.907
OCL27224.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.907
OCL25995.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.907
OCL26748.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.907
OCL28138.1
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.898
OCL28139.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.885
OCL28141.1
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.842
OCL27225.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.785
OCL28135.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.769
Your Current Organism:
Orenia metallireducens
NCBI taxonomy Id: 1413210
Other names: ATCC BAA-2645, JCM 31419, O. metallireducens, Orenia sp. Z6, strain Z6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.