Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CQD06436.1 | CQD06441.1 | BN1232_01113 | BN1232_01114 | Ferredoxin reductase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.786 |
CQD06436.1 | CQD18310.1 | BN1232_01113 | BN1232_04181 | Ferredoxin reductase. | Pyruvate synthase. | 0.787 |
CQD06441.1 | CQD06436.1 | BN1232_01114 | BN1232_01113 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Ferredoxin reductase. | 0.786 |
CQD06441.1 | CQD06445.1 | BN1232_01114 | BN1232_01115 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Glyoxalase/bleomycin resistance protein/dioxygenase. | 0.765 |
CQD06441.1 | CQD14021.1 | BN1232_01114 | BN1232_02885 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit. | 0.776 |
CQD06441.1 | CQD18310.1 | BN1232_01114 | BN1232_04181 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Pyruvate synthase. | 0.807 |
CQD06441.1 | gpmA | BN1232_01114 | BN1232_00941 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.791 |
CQD06441.1 | rplB | BN1232_01114 | BN1232_01137 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.774 |
CQD06441.1 | rplF | BN1232_01114 | BN1232_01156 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.790 |
CQD06441.1 | rplP | BN1232_01114 | BN1232_01141 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.771 |
CQD06441.1 | rplV | BN1232_01114 | BN1232_01139 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.749 |
CQD06441.1 | serC | BN1232_01114 | BN1232_04941 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.960 |
CQD06445.1 | CQD06441.1 | BN1232_01115 | BN1232_01114 | Glyoxalase/bleomycin resistance protein/dioxygenase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.765 |
CQD14021.1 | CQD06441.1 | BN1232_02885 | BN1232_01114 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.776 |
CQD14021.1 | CQD18310.1 | BN1232_02885 | BN1232_04181 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit. | Pyruvate synthase. | 0.957 |
CQD14021.1 | gpmA | BN1232_02885 | BN1232_00941 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit. | Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.822 |
CQD18310.1 | CQD06436.1 | BN1232_04181 | BN1232_01113 | Pyruvate synthase. | Ferredoxin reductase. | 0.787 |
CQD18310.1 | CQD06441.1 | BN1232_04181 | BN1232_01114 | Pyruvate synthase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.807 |
CQD18310.1 | CQD14021.1 | BN1232_04181 | BN1232_02885 | Pyruvate synthase. | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit. | 0.957 |
CQD18310.1 | gpmA | BN1232_04181 | BN1232_00941 | Pyruvate synthase. | Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.888 |
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