STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQD08333.1Anti-sigma factor. (98 aa)    
Predicted Functional Partners:
CQD08327.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.979
CQD22031.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.915
CQD07262.1
RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.797
whiB4_1
WhiB4; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
 
 0.756
CQD02576.1
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.743
CQD06865.1
RNA polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.741
CQD15591.1
RNA polymerase sigma factor SigC; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.734
CQD07589.1
RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family.
  
 
 0.731
CQD02664.1
Serine/threonine protein kinase.
    
 
 0.724
sigK
RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.719
Your Current Organism:
Mycobacterium lentiflavum
NCBI taxonomy Id: 141349
Other names: ATCC 51985, CCUG 42422, CCUG 42559, CIP 105465, DSM 44418, JCM 13390, M. lentiflavum, strain 2186/92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.