Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CQD10935.1Hypothetical protein. (451 aa)    
Predicted Functional Partners:
hyaB_1
Nickel/iron-hydrogenase I large subunit, HyaB.
 
  
 0.961
CQD10943.1
Hypothetical protein.
 
   
 0.952
CQD10939.1
Hypothetical protein.
 
     0.950
CQD10947.1
(Fe-S)-binding protein.
 
     0.947
CQD10957.1
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
  
 0.920
CQD10927.1
Nickel/iron hydrogenase maturation factor, HyaD.
 
     0.888
hyaB_2
Nickel/iron-hydrogenase I large subunit, HyaB.
 
  
 0.836
CQD23044.1
NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
  
 0.820
CQD23050.1
Hypothetical protein.
 
   
 0.798
CQD23051.1
Hypothetical protein.
 
     0.790
Your Current Organism:
Mycobacterium lentiflavum
NCBI taxonomy Id: 141349
Other names: ATCC 51985, CCUG 42422, CCUG 42559, CIP 105465, DSM 44418, JCM 13390, M. lentiflavum, strain 2186/92
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