STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CQD13590.1Trm112p-like protein; Belongs to the UPF0434 family. (71 aa)    
Predicted Functional Partners:
CQD13587.1
acyl-CoA synthetase.
 
    0.884
CQD21300.1
HIT domain-containing protein.
  
    0.867
CQD11663.1
Transmembrane protein.
  
     0.752
CQD02269.1
Cutinase.
  
     0.737
CQD02278.1
Transmembrane protein.
 
     0.693
CQD05467.1
acyl-ACP thioesterase.
  
     0.687
CQD02240.1
embA.
  
    0.643
embB
EmbB.
  
    0.628
embC
EmbC.
  
    0.627
CQD12928.1
Membrane protein.
  
     0.561
Your Current Organism:
Mycobacterium lentiflavum
NCBI taxonomy Id: 141349
Other names: ATCC 51985, CCUG 42422, CCUG 42559, CIP 105465, DSM 44418, JCM 13390, M. lentiflavum, strain 2186/92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.