STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrbE4AMembrane protein YrbE4A. (237 aa)    
Predicted Functional Partners:
mkl
Ribonucleotide ABC transporter ATP-binding protein.
 0.996
CQD21409.1
Virulence factor Mce family protein.
 
 0.981
CQD21403.1
Virulence factor Mce.
 
 0.979
CQD21412.1
Virulence factor Mce.
 
 0.978
CQD21400.1
Virulence factor Mce.
 
 0.975
mce4F
MCE-family protein Mce4F.
 
 0.974
CQD21406.1
Virulence factor Mce.
 
 0.974
CQD21415.1
TrnB2 protein.
 
 
0.955
mce1F_1
MCE-family protein Mce1F.
 
 0.953
mce1F_2
MCE-family protein MCE1F.
 
 0.951
Your Current Organism:
Mycobacterium lentiflavum
NCBI taxonomy Id: 141349
Other names: ATCC 51985, CCUG 42422, CCUG 42559, CIP 105465, DSM 44418, JCM 13390, M. lentiflavum, strain 2186/92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.