KSU59205.1 protein (Gordonia sp. SGDV85) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KSU59205.1

NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)

Predicted Functional Partners:

KSU59316.1

0.999

KSU59206.1

0.999

KSU59317.1

0.999

KSU59207.1

0.999

KSU59208.1

0.999

AS181_07830

0.999

KSU59318.1

0.999

KSU59210.1

0.999

KSU59211.1

0.999

KSU59212.1

0.999

Your Current Organism:

Gordonia sp. SGDV85

NCBI taxonomy Id: 1414651
Other names: G. sp. SGD-V-85, Gordonia sp. SGD-V-85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS181_07830	KSU59205.1	AS181_07830	AS181_07795	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59206.1	AS181_07830	AS181_07805	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59207.1	AS181_07830	AS181_07815	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit J; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59208.1	AS181_07830	AS181_07820	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59210.1	AS181_07830	AS181_07840	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59211.1	AS181_07830	AS181_07845	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59212.1	AS181_07830	AS181_07850	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59316.1	AS181_07830	AS181_07800	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59317.1	AS181_07830	AS181_07810	Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit K; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AS181_07830	KSU59318.1	AS181_07830	AS181_07835	Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	AS181_07830	AS181_07795	AS181_07830	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59206.1	AS181_07795	AS181_07805	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59207.1	AS181_07795	AS181_07815	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit J; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59208.1	AS181_07795	AS181_07820	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59210.1	AS181_07795	AS181_07840	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59211.1	AS181_07795	AS181_07845	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59212.1	AS181_07795	AS181_07850	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59316.1	AS181_07795	AS181_07800	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59317.1	AS181_07795	AS181_07810	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit K; Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KSU59205.1	KSU59318.1	AS181_07795	AS181_07835	NADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999