STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KSU56569.1Recombinase RecF; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)    
Predicted Functional Partners:
KSU56514.1
DNA polymerase III subunit beta; Binds the polymerase to DNA and acts as a sliding clamp; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
KSU59230.1
Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.933
KSU56515.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.933
KSU56570.1
DNA gyrase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.930
AS181_18410
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.928
KSU57751.1
DNA repair protein RecO; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.927
KSU56516.1
DNA gyrase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.861
KSU56513.1
Ribonuclease P protein component; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.836
KSU55751.1
DNA repair protein RecN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.758
KSU53119.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.704
Your Current Organism:
Gordonia sp. SGDV85
NCBI taxonomy Id: 1414651
Other names: G. sp. SGD-V-85, Gordonia sp. SGD-V-85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.