STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KSU56183.1Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)    
Predicted Functional Partners:
KSU56926.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.820
KSU56156.1
Cobalamin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
KSU59156.1
Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.773
rocD
Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.759
KSU59007.1
Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.751
KSU60197.1
Catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.748
KSU60820.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.729
KSU59545.1
Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.682
KSU60101.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.681
KSU60105.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.681
Your Current Organism:
Gordonia sp. SGDV85
NCBI taxonomy Id: 1414651
Other names: G. sp. SGD-V-85, Gordonia sp. SGD-V-85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.