STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHH19211.1RDD domain-containing protein. (259 aa)    
Predicted Functional Partners:
AHH22309.1
Hypothetical protein.
  
    0.663
AHH14869.1
Putative membrane protein.
 
    0.521
glnA2
Glutamate--ammonia ligase.
  
   0.478
glnA3
Glutamate--ammonia ligase.
  
   0.478
ku
Putative DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
       0.451
AHH21615.1
Putative ABC transporter, transmembrane protein.
  
  
 0.449
AHH21661.1
Hypothetical protein.
  
    0.430
AHH19881.1
Putative ferredoxin/ferredoxin--NADP reductase.
 
     0.428
AHH17333.1
Hypothetical protein.
 
    0.419
fprB
ferredoxin/ferredoxin--NADP reductase.
 
     0.418
Your Current Organism:
Nocardia nova
NCBI taxonomy Id: 1415166
Other names: N. nova SH22a, Nocardia nova SH22a
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