STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHH20194.1Putative HTH-type transcriptional regulatory protein. (119 aa)    
Predicted Functional Partners:
AHH20192.1
Hypothetical protein.
     
 0.797
AHH20193.1
Putative phage shock protein.
  
  
 0.797
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
 
  
 0.775
AHH20088.1
Hypothetical protein.
  
     0.760
AHH17976.1
Putative transcriptional regulator MerR family.
 
  
 0.750
AHH16879.1
Hypothetical protein.
 
     0.723
AHH17171.1
Hypothetical protein.
 
     0.716
AHH16071.1
Putative endonuclease NucS.
  
     0.714
AHH18495.1
Putative transcriptional elongation factor GreA.
 
     0.709
AHH19245.1
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
   
 0.704
Your Current Organism:
Nocardia nova
NCBI taxonomy Id: 1415166
Other names: N. nova SH22a, Nocardia nova SH22a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.