STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHH21620.1Citrate lyase beta subunit-like protein; Belongs to the HpcH/HpaI aldolase family. (270 aa)    
Predicted Functional Partners:
AHH21621.1
MaoC-like domain-containing protein.
 
  
 0.962
AHH21624.1
acetyl-/propionyl-CoA carboxylase beta subunit.
  
  
 0.939
AHH21622.1
acyl-CoA dehydrogenase.
 
  
 0.903
AHH21623.1
acetyl-/propionyl-CoA carboxylase alpha subunit.
  
  
 0.875
AHH18299.1
MaoC-like domain-containing protein.
 
  
 0.798
AHH17621.1
MoaC family protein.
 
  
 0.780
AHH17573.1
Acyl dehydratase.
 
  
 0.777
scoA
Putative succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A ScoA.
     
 0.763
scoB
Putative succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B ScoB.
     
 0.681
AHH21625.1
Putative transcriptional regulator, TetR family.
 
   
 0.672
Your Current Organism:
Nocardia nova
NCBI taxonomy Id: 1415166
Other names: N. nova SH22a, Nocardia nova SH22a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.