KOX14915.1 protein (Micromonospora sp. NRRLB16802)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KOX14915.1

Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)

Predicted Functional Partners:

KOX14917.1

0.992

KOX15153.1

0.974

KOX14916.1

0.956

KOX15149.1

0.914

KOX14358.1

0.909

KOX08321.1

0.884

KOX14918.1

0.753

KOX04899.1

0.682

KOX03986.1

0.671

KOX10526.1

0.664

Your Current Organism:

Micromonospora sp. NRRLB16802

NCBI taxonomy Id: 1415541
Other names: M. sp. NRRL B-16802, Micromonospora sp. NRRL B-16802

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOX03986.1	KOX10526.1	ADK66_27375	ADK66_08885	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
KOX03986.1	KOX14358.1	ADK66_27375	ADK66_03945	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KOX03986.1	KOX14915.1	ADK66_27375	ADK66_02420	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KOX03986.1	KOX14916.1	ADK66_27375	ADK66_02425	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
KOX03986.1	KOX15149.1	ADK66_27375	ADK66_02445	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
KOX03986.1	KOX15153.1	ADK66_27375	ADK66_02490	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
KOX04899.1	KOX10526.1	ADK66_25625	ADK66_08885	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
KOX04899.1	KOX14358.1	ADK66_25625	ADK66_03945	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KOX04899.1	KOX14915.1	ADK66_25625	ADK66_02420	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
KOX04899.1	KOX14916.1	ADK66_25625	ADK66_02425	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
KOX04899.1	KOX15149.1	ADK66_25625	ADK66_02445	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
KOX04899.1	KOX15153.1	ADK66_25625	ADK66_02490	Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KOX08321.1	KOX10526.1	ADK66_16570	ADK66_08885	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
KOX08321.1	KOX14358.1	ADK66_16570	ADK66_03945	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KOX08321.1	KOX14915.1	ADK66_16570	ADK66_02420	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KOX08321.1	KOX14916.1	ADK66_16570	ADK66_02425	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KOX08321.1	KOX14918.1	ADK66_16570	ADK66_02440	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
KOX08321.1	KOX15149.1	ADK66_16570	ADK66_02445	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KOX08321.1	KOX15153.1	ADK66_16570	ADK66_02490	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KOX10526.1	KOX03986.1	ADK66_08885	ADK66_27375	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532