STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOX09901.1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
KOX03658.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.928
KOX06936.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.899
KOX10786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.655
KOX08976.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.655
KOX06213.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.655
KOX04332.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.655
KOX02384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.655
KOX04146.1
Adenylylsulfate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.617
KOX09900.1
Acetyl xylan esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.561
Your Current Organism:
Micromonospora sp. NRRLB16802
NCBI taxonomy Id: 1415541
Other names: M. sp. NRRL B-16802, Micromonospora sp. NRRL B-16802
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.