STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOX09907.11,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)    
Predicted Functional Partners:
KOX09906.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  
0.805
KOX08477.1
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.798
KOX10668.1
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
KOX11807.1
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.728
KOX08212.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
KOX11829.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
  0.689
KOX09905.1
Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.668
KOX07750.1
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.647
KOX07182.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.630
KOX07991.1
Poly(3-hydroxybutyrate) depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.610
Your Current Organism:
Micromonospora sp. NRRLB16802
NCBI taxonomy Id: 1415541
Other names: M. sp. NRRL B-16802, Micromonospora sp. NRRL B-16802
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