KOX07179.1 protein (Micromonospora sp. NRRLB16802)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KOX07179.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)

Predicted Functional Partners:

KOX07169.1

0.997

KOX07168.1

0.877

KOX15044.1

0.689

KOX08321.1

0.614

KOX14358.1

0.587

KOX07094.1

0.516

KOX05823.1

0.489

KOX07520.1

0.424

KOX07194.1

0.416

Your Current Organism:

Micromonospora sp. NRRLB16802

NCBI taxonomy Id: 1415541
Other names: M. sp. NRRL B-16802, Micromonospora sp. NRRL B-16802

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOX05823.1	KOX07094.1	ADK66_24590	ADK66_20650	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
KOX05823.1	KOX07169.1	ADK66_24590	ADK66_20460	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
KOX05823.1	KOX07179.1	ADK66_24590	ADK66_20455	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
KOX05823.1	KOX07194.1	ADK66_24590	ADK66_20220	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
KOX05823.1	KOX08321.1	ADK66_24590	ADK66_16570	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KOX05823.1	KOX14358.1	ADK66_24590	ADK66_03945	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
KOX07094.1	KOX05823.1	ADK66_20650	ADK66_24590	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
KOX07094.1	KOX07169.1	ADK66_20650	ADK66_20460	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
KOX07094.1	KOX07179.1	ADK66_20650	ADK66_20455	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
KOX07094.1	KOX07194.1	ADK66_20650	ADK66_20220	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
KOX07094.1	KOX08321.1	ADK66_20650	ADK66_16570	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
KOX07094.1	KOX14358.1	ADK66_20650	ADK66_03945	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KOX07168.1	KOX07169.1	ADK66_20450	ADK66_20460	Involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
KOX07168.1	KOX07179.1	ADK66_20450	ADK66_20455	Involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
KOX07169.1	KOX05823.1	ADK66_20460	ADK66_24590	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
KOX07169.1	KOX07094.1	ADK66_20460	ADK66_20650	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
KOX07169.1	KOX07168.1	ADK66_20460	ADK66_20450	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	0.840
KOX07169.1	KOX07179.1	ADK66_20460	ADK66_20455	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KOX07169.1	KOX08321.1	ADK66_20460	ADK66_16570	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
KOX07169.1	KOX15044.1	ADK66_20460	ADK66_00565	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547