KOX04123.1 protein (Micromonospora sp. NRRLB16802)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KOX04123.1

Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)

Predicted Functional Partners:

KOX06888.1

0.839

KOX07205.1

0.832

KOX07781.1

0.776

KOX04005.1

0.667

KOX04003.1

0.665

KOX04004.1

0.641

Your Current Organism:

Micromonospora sp. NRRLB16802

NCBI taxonomy Id: 1415541
Other names: M. sp. NRRL B-16802, Micromonospora sp. NRRL B-16802

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOX04003.1	KOX04004.1	ADK66_27510	ADK66_27515	Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KOX04003.1	KOX04005.1	ADK66_27510	ADK66_27520	Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KOX04003.1	KOX04123.1	ADK66_27510	ADK66_27525	Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KOX04004.1	KOX04003.1	ADK66_27515	ADK66_27510	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KOX04004.1	KOX04005.1	ADK66_27515	ADK66_27520	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KOX04004.1	KOX04123.1	ADK66_27515	ADK66_27525	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
KOX04005.1	KOX04003.1	ADK66_27520	ADK66_27510	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KOX04005.1	KOX04004.1	ADK66_27520	ADK66_27515	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KOX04005.1	KOX04123.1	ADK66_27520	ADK66_27525	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
KOX04123.1	KOX04003.1	ADK66_27525	ADK66_27510	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KOX04123.1	KOX04004.1	ADK66_27525	ADK66_27515	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
KOX04123.1	KOX04005.1	ADK66_27525	ADK66_27520	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
KOX04123.1	KOX06888.1	ADK66_27525	ADK66_21070	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
KOX04123.1	KOX07205.1	ADK66_27525	ADK66_20310	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
KOX04123.1	KOX07781.1	ADK66_27525	ADK66_18525	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
KOX06888.1	KOX04123.1	ADK66_21070	ADK66_27525	Derived by automated computational analysis using gene prediction method: Protein Homology.	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
KOX06888.1	KOX07205.1	ADK66_21070	ADK66_20310	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
KOX06888.1	KOX07781.1	ADK66_21070	ADK66_18525	Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KOX07205.1	KOX04123.1	ADK66_20310	ADK66_27525	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
KOX07205.1	KOX06888.1	ADK66_20310	ADK66_21070	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901